| Draft Picks | ||||||
| Rd | # | Orig Team | # | Curr Team | Player | Overall |
| 1 | 1 | BEE |   |   | 2016 Kris Bryant | 1 |
| 1 | 2 | STO |   |   | 2016 Carlos Correa | 2 |
| 1 | 3 | BUL |   |   | 2016 Corey Seager | 3 |
| 1 | 4 | POW |   |   | 2016 Francisco Lindor | 4 |
| 1 | 5 | WHI |   |   | 2016 Maikel Franco | 5 |
| 1 | 6 | ROO |   |   | 2016 Noah Syndergaard | 6 |
| 1 | 7 | BLA |   |   | 2016 Steven Matz | 7 |
| 1 | 8 | OUT |   |   | 2016 Kyle Schwarber | 8 |
| 1 | 9 | DRT |   |   | 2016 Lance McCullers | 9 |
| 1 | 10 | PIN |   |   | 2016 Matt Duffy | 10 |
| 1 | 11 | BCK |   |   | 2016 Luis Severino | 11 |
| 1 | 12 | BMD |   |   | 2016 Miguel Sano | 12 |
| 1 | 13 | HEL |   |   | 2016 Raisel Iglesias | 13 |
| 1 | 14 | BOM |   |   | 2016 Brandon Phillips | 14 |
| 1 | 15 | MB |   | ROO | 2016 Addison Russell | 15 |
| 1 | 16 | JAB |   |   | 2016 James Shields | 16 |
| 1 | 17 | EXP |   |   | 2016 Michael Conforto | 17 |
| 1 | 18 | AIR |   | PIN | 2016 Michael Fiers | 18 |
| 1 | 19 | SLG |   |   | 2016 Aaron Nola | 19 |
| 1 | 20 | FUR |   | BCK | 2016 Ketel Marte | 20 |
| 1 | 21 | KNT |   |   | 2016 Byron Buxton | 21 |
| 1 | 22 | TUA |   |   | 2016 Odubel Herrera | 22 |
| 1 | 23 | HAM |   |   | 2016 Richie Shaffer | 23 |
| 1 | 24 | STA |   |   | 2016 Joe Ross | 24 |
| 2 | 1 | BEE |   |   | 2016 Brandon Barnes | 25 |
| 2 | 2 | STO |   |   | 2016 Rich Hill | 26 |
| 2 | 3 | BUL |   |   | 2016 Carlos Rodon | 27 |
| 2 | 4 | POW |   |   | 2016 Carson Smith | 28 |
| 2 | 5 | WHI |   |   | 2016 Kolten Wong | 29 |
| 2 | 6 | ROO |   |   | 2016 Devon Travis | 30 |
| 2 | 7 | BLA |   | BUL | 2016 Jerad Eickhoff | 31 |
| 2 | 8 | OUT |   |   | 2016 Cody Anderson | 32 |
| 2 | 9 | DRT |   |   | 2016 Daniel Norris | 33 |
| 2 | 10 | PIN |   |   | 2016 Taylor Jungmann | 34 |
| 2 | 11 | BCK |   |   | 2016 Justin Bour | 35 |
| 2 | 12 | BMD |   |   | 2016 Stephen Piscotty | 36 |
| 2 | 13 | HEL |   |   | 2016 Patrick Corbin | 37 |
| 2 | 14 | BOM |   |   | 2016 Robbie Ray | 38 |
| 2 | 15 | MB |   |   | 2016 Trayce Thompson | 39 |
| 2 | 16 | JAB |   | FUR | 2016 Franklin Gutierrez | 40 |
| 2 | 17 | EXP |   | STO | 2016 Mikie Mahtook | 41 |
| 2 | 18 | AIR |   | MB | 2016 Blake Swihart | 42 |
| 2 | 19 | SLG |   | MB | 2016 Hunter Strickland | 43 |
| 2 | 20 | FUR |   | AIR | 2016 Jose Iglesias | 44 |
| 2 | 21 | KNT |   |   | 2016 Kevin Gausman | 45 |
| 2 | 22 | TUA |   |   | 2016 Jonathan Villar | 46 |
| 2 | 23 | HAM |   | WHI | 2016 Jung Ho Kang | 47 |
| 2 | 24 | STA |   |   | 2016 Chi Chi Gonzalez | 48 |
| 3 | 1 | BEE |   |   | 2016 Jay Bruce | 49 |
| 3 | 2 | STO |   |   | 2016 Carter Capps | 50 |
| 3 | 3 | BUL |   |   | 2016 Michael Taylor | 51 |
| 3 | 4 | POW |   |   | 2016 Nathan Karns | 52 |
| 3 | 5 | WHI |   |   | 2016 Billy Burns | 53 |
| 3 | 6 | ROO |   |   | 2016 Brett Wallace | 54 |
| 3 | 7 | BLA |   |   | 2016 Jason Rogers | 55 |
| 3 | 8 | OUT |   |   | 2016 Joc Pederson | 56 |
| 3 | 9 | DRT |   |   | 2016 Keone Kela | 57 |
| 3 | 10 | PIN |   |   | 2016 Mychal Givens | 58 |
| 3 | 11 | BCK |   |   | 2016 Trevor Plouffe | 59 |
| 3 | 12 | BMD |   |   | 2016 Hector Olivera | 60 |
| 3 | 13 | HEL |   |   | 2016 Chris Young | 61 |
| 3 | 14 | BOM |   |   | 2016 Jose Reyes | 62 |
| 3 | 15 | MB |   |   | 2016 Andres Blanco | 63 |
| 3 | 16 | JAB |   |   | 2016 Alex Rodriguez | 64 |
| 3 | 17 | EXP |   |   | 2016 Jimmy Nelson | 65 |
| 3 | 18 | AIR |   |   | 2016 Chris Heston | 66 |
| 3 | 19 | SLG |   | BUL | 2016 Eddie Rosario | 67 |
| 3 | 20 | FUR |   | DRT | 2016 Curt Casali | 68 |
| 3 | 21 | KNT |   |   | 2016 Delino DeShields | 69 |
| 3 | 22 | TUA |   |   | 2016 Brad Miller | 70 |
| 3 | 23 | HAM |   |   | 2016 Miguel Rojas | 71 |
| 3 | 24 | STA |   |   | 2016 Travis Shaw | 72 |
| 4 | 1 | BEE |   |   | 2016 Brendan Ryan | 73 |
| 4 | 2 | STO |   |   | 2016 Aaron Altherr | 74 |
| 4 | 3 | BUL |   | BLA | 2016 Ryan Raburn | 75 |
| 4 | 4 | POW |   |   | 2016 Scott Feldman | 76 |
| 4 | 5 | WHI |   |   | 2016 Kelby Tomlinson | 77 |
| 4 | 6 | ROO |   |   | 2016 Yimi Garcia | 78 |
| 4 | 7 | BLA |   | BUL | 2016 Joey Gallo | 79 |
| 4 | 8 | OUT |   | STA | 2016 Nick Tropeano | 80 |
| 4 | 9 | DRT |   |   | 2016 Brandon Finnegan | 81 |
| 4 | 10 | PIN |   |   | 2016 A.J. Ellis | 82 |
| 4 | 11 | BCK |   |   | 2016 J.T. Realmuto | 83 |
| 4 | 12 | BMD |   |   | 2016 Jeff Manship | 84 |
| 4 | 13 | HEL |   |   | 2016 A.J. Ramos | 85 |
| 4 | 14 | BOM |   |   | 2016 Cameron Maybin | 86 |
| 4 | 15 | MB |   |   | 2016 Roberto Osuna | 87 |
| 4 | 16 | JAB |   | FUR | 2016 Darin Ruf | 88 |
| 4 | 17 | EXP |   |   | 2016 Adonis Garcia | 89 |
| 4 | 18 | AIR |   | EXP | 2016 James McCann | 90 |
| 4 | 19 | SLG |   |   | 2016 Eduardo Rodriguez | 91 |
| 4 | 20 | FUR |   |   | 2016 Ryan Zimmerman | 92 |
| 4 | 21 | KNT |   |   | 2016 Matt Moore | 93 |
| 4 | 22 | TUA |   |   | 2016 Tucker Barnhart | 94 |
| 4 | 23 | HAM |   |   | 2016 Zach Davies | 95 |
| 4 | 24 | STA |   | HAM | 2016 Tyler Duffey | 96 |
| 5 | 1 | BEE |   |   | 2016 Brad Boxberger | 97 |
| 5 | 2 | STO |   |   | 2016 Greg Bird | 98 |
| 5 | 3 | BUL |   |   | 2016 Rusney Castillo | 99 |
| 5 | 4 | POW |   |   | 2016 Ben Paulsen | 100 |
| 5 | 5 | WHI |   |   | 2016 Kendall Graveman | 101 |
| 5 | 6 | ROO |   |   | 2016 Jarrod Saltalamacchia | 102 |
| 5 | 7 | BLA |   |   | 2016 Cole Gillespie | 103 |
| 5 | 8 | OUT |   |   | 2016 Jason Grilli | 104 |
| 5 | 9 | DRT |   |   | 2016 Nick Martinez | 105 |
| 5 | 10 | PIN |   |   | 2016 Tommy Pham | 106 |
| 5 | 11 | BCK |   | FUR | 2016 Justin Grimm | 107 |
| 5 | 12 | BMD |   |   | 2016 Justin Miller | 108 |
| 5 | 13 | HEL |   |   | 2016 Ryan Madson | 109 |
| 5 | 14 | BOM |   |   | 2016 Yasmany Tomas | 110 |
| 5 | 15 | MB |   | JAB | 2016 Marwin Gonzalez | 111 |
| 5 | 16 | JAB |   |   | 2016 Josh Tomlin | 112 |
| 5 | 17 | EXP |   |   | 2016 Clint Robinson | 113 |
| 5 | 18 | AIR |   | MB | 2016 Christian Colon | 114 |
| 5 | 19 | SLG |   |   | 2016 Adam Conley | 115 |
| 5 | 20 | FUR |   | PIN | 2016 Mark Canha | 116 |
| 5 | 21 | KNT |   | SLG | 2016 Adeiny Hechavarria | 117 |
| 5 | 22 | TUA |   |   | 2016 Felipe Rivero | 118 |
| 5 | 23 | HAM |   | FUR | 2016 Travis Wood | 119 |
| 5 | 24 | STA |   |   | 2016 Erik Goeddel | 120 |
| 6 | 1 | BEE |   |   | 2016 Burke Badenhop | 121 |
| 6 | 2 | STO |   |   | 2016 Logan Verrett | 122 |
| 6 | 3 | BUL |   |   | 2016 Danny Espinosa | 123 |
| 6 | 4 | POW |   |   | 2016 Andrew Chafin | 124 |
| 6 | 5 | WHI |   |   | 2016 Cesar Hernandez | 125 |
| 6 | 6 | ROO |   |   | 2016 Domingo Santana | 126 |
| 6 | 7 | BLA |   |   | 2016 Arodys Vizcaino | 127 |
| 6 | 8 | OUT |   |   | 2016 George Kontos | 128 |
| 6 | 9 | DRT |   |   | 2016 Luke Hochevar | 129 |
| 6 | 10 | PIN |   |   | 2016 Michael Blazek | 130 |
| 6 | 11 | BCK |   |   | 2016 Jason Vargas | 131 |
| 6 | 12 | BMD |   |   | 2016 Vincent Velasquez | 132 |
| 6 | 13 | HEL |   |   | 2016 Ryan Goins | 133 |
| 6 | 14 | BOM |   |   | 2016 Kevin Siegrist | 134 |
| 6 | 15 | MB |   | TUA | 2016 Kennys Vargas | 135 |
| 6 | 16 | JAB |   |   | 2016 Mark Lowe | 136 |
| 6 | 17 | EXP |   |   | 2016 Josh Fields | 137 |
| 6 | 18 | AIR |   |   | 2016 Bryan Shaw | 138 |
| 6 | 19 | SLG |   | TUA | 2016 Alex Colome | 139 |
| 6 | 20 | FUR |   | AIR | 2016 C.J. Cron | 140 |
| 6 | 21 | KNT |   |   | 2016 Liam Hendriks | 141 |
| 6 | 22 | TUA |   |   | 2016 Brandon Maurer | 142 |
| 6 | 23 | HAM |   |   | 2016 Matt den Dekker | 143 |
| 6 | 24 | STA |   |   | 2016 Preston Tucker | 144 |
| 7 | 1 | BEE |   |   | 2016 Jeff Baker | 145 |
| 7 | 2 | STO |   |   | 2016 J.J. Hoover | 146 |
| 7 | 3 | BUL |   |   | 2016 Glen Perkins | 147 |
| 7 | 4 | POW |   |   | 2016 Joey Butler | 148 |
| 7 | 5 | WHI |   |   | 2016 Cameron Rupp | 149 |
| 7 | 6 | ROO |   |   | 2016 Hansel Robles | 150 |
| 7 | 7 | BLA |   | STA | 2016 Steve Geltz | 151 |
| 7 | 8 | OUT |   |   | 2016 Steven Souza | 152 |
| 7 | 9 | DRT |   | FUR | 2016 Jed Lowrie | 153 |
| 7 | 10 | PIN |   | FUR | 2016 Brayan Pena | 154 |
| 7 | 11 | BCK |   |   | 2016 Josh Phegley | 155 |
| 7 | 12 | BMD |   |   | 2016 Aaron Loup | 156 |
| 7 | 13 | HEL |   |   | 2016 Shawn Kelley | 157 |
| 7 | 14 | BOM |   |   | 2016 J.P. Howell | 158 |
| 7 | 15 | MB |   | AIR | 2016 Jace Peterson | 159 |
| 7 | 16 | JAB |   |   | 2016 Zack Cozart | 160 |
| 7 | 17 | EXP |   |   | 2016 Chad Bettis | 161 |
| 7 | 18 | AIR |   |   | 2016 Yan Gomes | 162 |
| 7 | 19 | SLG |   |   | 2016 Kelly Johnson | 163 |
| 7 | 20 | FUR |   | BCK | 2016 Chris Stewart | 164 |
| 7 | 21 | KNT |   |   | 2016 Jon Gray | 165 |
| 7 | 22 | TUA |   |   | 2016 Antonio Bastardo | 166 |
| 7 | 23 | HAM |   |   | 2016 Pedro Baez | 167 |
| 7 | 24 | STA |   |   | 2016 Abraham Almonte | 168 |
| 8 | 1 | BEE |   |   | 2016 Billy Butler | 169 |
| 8 | 2 | STO |   |   | 2016 Jake Elmore | 170 |
| 8 | 3 | BUL |   |   | 2016 Matt Albers | 171 |
| 8 | 4 | POW |   |   | 2016 Pablo Sandoval | 172 |
| 8 | 5 | WHI |   |   | 2016 Joe Kelly | 173 |
| 8 | 6 | ROO |   |   | 2016 Justin Ruggiano | 174 |
| 8 | 7 | BLA |   |   | 2016 Melvin Upton | 175 |
| 8 | 8 | OUT |   |   | 2016 Matt Thornton | 176 |
| 8 | 9 | DRT |   |   | 2016 Alex Rios | 177 |
| 8 | 10 | PIN |   |   | 2016 Cory Spangenberg | 178 |
| 8 | 11 | BCK |   |   | 2016 Jason Frasor | 179 |
| 8 | 12 | BMD |   |   | 2016 Sergio Romo | 180 |
| 8 | 13 | HEL |   |   | 2016 Miguel Socolovich | 181 |
| 8 | 14 | BOM |   |   | 2016 Kurt Suzuki | 182 |
| 8 | 15 | MB |   |   | 2016 Brandon Guyer | 183 |
| 8 | 16 | JAB |   |   | 2016 Fernando Rodriguez | 184 |
| 8 | 17 | EXP |   |   | 2016 Carlos Villanueva | 185 |
| 8 | 18 | AIR |   |   | 2016 Zach McAllister | 186 |
| 8 | 19 | SLG |   |   | 2016 Xavier Cedeno | 187 |
| 8 | 20 | FUR |   | AIR | 2016 C.J. Wilson | 188 |
| 8 | 21 | KNT |   | SLG | 2016 Sean Gilmartin | 189 |
| 8 | 22 | TUA |   |   | 2016 Jake Smolinski | 190 |
| 8 | 23 | HAM |   |   | 2016 Carlos Perez | 191 |
| 8 | 24 | STA |   |   | 2016 Tommy La Stella | 192 |
| 9 | 1 | BEE |   |   | 2016 Blaine Boyer | 193 |
| 9 | 2 | STO |   |   | 2015 Jake Lamb | 194 |
| 9 | 3 | BUL |   |   | 2016 Josh Osich | 195 |
| 9 | 4 | POW |   |   | 2016 Jeremy Jeffress | 196 |
| 9 | 5 | WHI |   |   | 2016 Chasen Shreve | 197 |
| 9 | 6 | ROO |   |   | 2016 Jedd Gyorko | 198 |
| 9 | 7 | BLA |   | AIR | 2016 Trevor Gott | 199 |
| 9 | 8 | OUT |   |   | 2016 Chris Gimenez | 200 |
| 9 | 9 | DRT |   |   | 2016 Martin Perez | 201 |
| 9 | 10 | PIN |   |   | 2016 Tim Cooney | 202 |
| 9 | 11 | BCK |   |   | 2016 Cesar Ramos | 203 |
| 9 | 12 | BMD |   |   | 2016 Joe Blanton | 204 |
| 9 | 13 | HEL |   |   | 2016 Jordan Pacheco | 205 |
| 9 | 14 | BOM |   |   | 2016 Jimmy Paredes | 206 |
| 9 | 15 | MB |   |   | 2016 J.B. Shuck | 207 |
| 9 | 16 | JAB |   |   | 2016 Erick Aybar | 208 |
| 9 | 17 | EXP |   |   | 2016 Ryan Weber | 209 |
| 9 | 18 | AIR |   | BLA | 2016 Caleb Joseph | 210 |
| 9 | 19 | SLG |   | POW | 2016 Wade Miley | 211 |
| 9 | 20 | FUR |   |   | 2016 Edwin Jackson | 212 |
| 9 | 21 | KNT |   |   | 2016 Daniel Hudson | 213 |
| 9 | 22 | TUA |   |   | 2016 Bo Schultz | 214 |
| 9 | 23 | HAM |   |   | 2016 Dalton Pompey | 215 |
| 9 | 24 | STA |   |   | 2016 Drew VerHagen | 216 |
| 10 | 1 | BEE |   |   | 2016 Jason Bourgeois | 217 |
| 10 | 2 | STO |   |   | 2016 Desmond Jennings | 218 |
| 10 | 3 | BUL |   |   | 2016 Wilin Rosario | 219 |
| 10 | 4 | POW |   |   | 2016 Austin Jackson | 220 |
| 10 | 5 | WHI |   |   | 2016 Delmon Young | 221 |
| 10 | 6 | ROO |   |   | 2016 Matt Adams | 222 |
| 10 | 7 | BLA |   |   | 2016 Freddy Galvis | 223 |
| 10 | 8 | OUT |   |   | 2016 Casey Fien | 224 |
| 10 | 9 | DRT |   |   | 2016 Will Middlebrooks | 225 |
| 10 | 10 | PIN |   |   | 2016 Daniel Castro | 226 |
| 10 | 11 | BCK |   |   | 2016 Franklin Morales | 227 |
| 10 | 12 | BMD |   |   | 2016 Corey Knebel | 228 |
| 10 | 13 | HEL |   |   | 2016 Steve Clevenger | 229 |
| 10 | 14 | BOM |   |   | 2016 Josh Collmenter | 230 |
| 10 | 15 | MB |   |   | 2016 Andrew Susac | 231 |
| 10 | 16 | JAB |   |   | 2016 Ryan Tepera | 232 |
| 10 | 17 | EXP |   |   | 2016 Scott Van Slyke | 233 |
| 10 | 18 | AIR |   |   | 2016 David Freese | 234 |
| 10 | 19 | SLG |   |   | 2016 Chris Hatcher | 235 |
| 10 | 20 | FUR |   |   | 2016 Chris Denorfia | 236 |
| 10 | 21 | KNT |   |   | 2016 Archie Bradley | 237 |
| 10 | 22 | TUA |   |   | 2016 Nick Ahmed | 238 |
| 10 | 23 | HAM |   |   | 2016 Jerry Sands | 239 |
| 10 | 24 | STA |   |   | 2016 Martin Maldonado | 240 |
| 11 | 1 | BEE |   |   | 2016 Clint Barmes | 241 |
| 11 | 2 | STO |   |   | 2016 Brian Ellington | 242 |
| 11 | 3 | BUL |   |   | 2016 Blaine Hardy | 243 |
| 11 | 4 | WHI |   |   | 2016 Jeremy Hellickson | 244 |
| 11 | 5 | ROO |   |   | 2016 Juan Nicasio | 245 |
| 11 | 6 | BLA |   |   | 2016 Randall Delgado | 246 |
| 11 | 7 | OUT |   |   | 2016 Jered Weaver | 247 |
| 11 | 8 | DRT |   |   | 2016 Neal Cotts | 248 |
| 11 | 9 | PIN |   |   | 2016 Ike Davis | 249 |
| 11 | 10 | BCK |   |   | 2016 Scooter Gennett | 250 |
| 11 | 11 | BMD |   |   | 2016 Greg Garcia | 251 |
| 11 | 12 | HEL |   |   | 2016 Jose Alvarez | 252 |
| 11 | 13 | BOM |   |   | 2016 Arquimedes Caminero | 253 |
| 11 | 14 | MB |   |   | 2016 Jesse Chavez | 254 |
| 11 | 15 | JAB |   |   | 2016 Evan Scribner | 255 |
| 11 | 16 | EXP |   |   | 2016 Aaron Barrett | 256 |
| 11 | 17 | AIR |   |   | 2016 Jeanmar Gomez | 257 |
| 11 | 18 | SLG |   |   | 2016 Tyler Flowers | 258 |
| 11 | 19 | FUR |   |   | 2016 Ryan Hanigan | 259 |
| 11 | 20 | KNT |   |   | 2016 Alex Guerrero | 260 |
| 11 | 21 | TUA |   |   | 2016 Colin Rea | 261 |
| 11 | 22 | HAM |   |   | 2016 Chase Anderson | 262 |
| 11 | 23 | STA |   |   | 2016 Kris Medlen | 263 |
| 12 | 1 | STO |   |   | 2016 Tyler Saladino | 264 |
| 12 | 2 | BUL |   |   | 2016 Greg Holland | 265 |
| 12 | 3 | BLA |   |   | 2016 Zach Duke | 266 |
| 12 | 4 | OUT |   |   | 2016 Aramis Ramirez | 267 |
| 12 | 5 | DRT |   |   | 2016 Jake Marisnick | 268 |
| 12 | 6 | BCK |   |   | 2016 Ryan Howard | 269 |
| 12 | 7 | BMD |   |   | 2016 Juan Lagares | 270 |
| 12 | 8 | HEL |   |   | 2016 Rajai Davis | 271 |
| 12 | 9 | BOM |   |   | 2016 Vidal Nuno | 272 |
| 12 | 10 | MB |   |   | 2016 Johnny Giavotella | 273 |
| 12 | 11 | JAB |   |   | 2016 Chris Narveson | 274 |
| 12 | 12 | EXP |   |   | 2016 Luis Avilan | 275 |
| 12 | 13 | AIR |   |   | 2016 Anthony Gose | 276 |
| 12 | 14 | SLG |   |   | 2016 Pat Neshek | 277 |
| 12 | 15 | KNT |   |   | 2016 Jason Castro | 278 |
| 12 | 16 | HAM |   |   | 2016 Manny Parra | 279 |
| 12 | 17 | STA |   |   | 2016 Tyler Collins | 280 |
| 13 | 1 | OUT |   |   | 2016 Stephen Drew | 281 |
| 13 | 2 | DRT |   |   | 2016 Zack Godley | 282 |
| 13 | 3 | MB |   |   | 2016 Tom Layne | 283 |
| 13 | 4 | JAB |   |   | 2016 Ryan Webb | 284 |
| 13 | 5 | AIR |   |   | 2016 Ezequiel Carrera | 285 |
| 13 | 6 | SLG |   |   | 2016 Derek Holland | 286 |
| 13 | 7 | KNT |   |   | 2016 Jimmy Rollins | 287 |
| 13 | 8 | HAM |   |   | 2016 Jefry Marte | 288 |
| 14 | 1 | AIR |   | SLG | 2016 Clayton Richard | 289 |
| 14 | 2 | KNT |   |   | 2016 Chase Utley | 290 |
| 15 | 1 | KNT |   |   | 2016 Steve Cishek | 291 |
| 16 | 1 | KNT |   |   | 2016 Henry Owens | 292 |
| 17 | 1 | KNT |   |   | 2016 Josh Hamilton | 293 |
| 18 | 1 | KNT |   |   | 2016 Will Venable | 294 |